Protein Info for MMJJ_RS01040 in Methanococcus maripaludis JJ

Annotation: DUF4013 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 36 to 62 (27 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 116 to 141 (26 residues), see Phobius details amino acids 161 to 185 (25 residues), see Phobius details PF13197: DUF4013" amino acids 2 to 140 (139 residues), 38.3 bits, see alignment E=5.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>MMJJ_RS01040 DUF4013 domain-containing protein (Methanococcus maripaludis JJ)
MTFLINGYWLKTIKYTINSQNIPDWTGVLELLKYGVIYTIGLFIIGIIFQSPFYMILLAQ
IVLNLPDLGILSNLPYICSFLSWMYIPLGTLNYIEKNKFLALFNVKKSFKLYSKEYINYL
AASFLLICIYSIFELLIGYLIELVIDKVVANPNLITDPNFLSWQIFWIPALYVNSFVCFT
IFLWLSRGIGIYYNISTGRNDVLTK