Protein Info for MMJJ_RS00095 in Methanococcus maripaludis JJ

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details PF03773: ArsP_1" amino acids 19 to 281 (263 residues), 116.3 bits, see alignment E=7.7e-38

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 98% identity to mmp:MMP0973)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>MMJJ_RS00095 permease (Methanococcus maripaludis JJ)
MIQTDAIFISLEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIII
ASLIGAVLPLCSASGVPVANVMNSKGTNLGITMSFIVSASSITPLGVMLTYSLLGYEIAV
MQICASLVLACSLGIIFYNDKIPFYFEEYDVKAEETFLKVLFKQMKNLMPAIMIGFLISG
FMMYFIPKDIILYALSNNVMMYFYASVARIFIFLCPNAMIPLISSVAINGVPKGLILSFL
ISAPSIGLPMISAMLKVYGKKIALKYVFGVIMLGGIIGILVDILL