Protein Info for LRK55_RS18720 in Rhodanobacter denitrificans MT42

Annotation: phosphatase PAP2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details PF01569: PAP2" amino acids 68 to 179 (112 residues), 55.2 bits, see alignment E=3.2e-19

Best Hits

Predicted SEED Role

"Bacitracin transport permease protein BCRC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>LRK55_RS18720 phosphatase PAP2 family protein (Rhodanobacter denitrificans MT42)
MTSPISGFGTLAYAVDLRLFHAIHPSTPPSSAMLQVARGLADGPLILTAAFLGTMLMVPR
WSMRSTALKASVAAAATLLANLIIGLIWDRARPFVAGAGQAWVSHAATGSFPSDHLTAQW
VIAGMLLLDRRTRAWSLAIALLGLPMAWARIYLGVHYPGDMLGALAMGALAMWIGWGWLR
RPATTPAIVSSSSPT