Protein Info for LRK55_RS18465 in Rhodanobacter denitrificans MT42

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 PF00580: UvrD-helicase" amino acids 2 to 231 (230 residues), 147.9 bits, see alignment E=1.4e-46 PF13245: AAA_19" amino acids 6 to 228 (223 residues), 68.7 bits, see alignment E=1.8e-22 PF13361: UvrD_C" amino acids 251 to 352 (102 residues), 26.6 bits, see alignment E=1.2e-09 amino acids 494 to 560 (67 residues), 82.6 bits, see alignment E=1.2e-26 PF13538: UvrD_C_2" amino acids 504 to 557 (54 residues), 35.5 bits, see alignment 2.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (577 amino acids)

>LRK55_RS18465 ATP-dependent helicase (Rhodanobacter denitrificans MT42)
MLNAAQEQAVRMQGHCLVTACPGSGKTKVLEHRAAHLLSEPDANVLGVTFTAESAAELEH
RIRQQAPRAGRRLLTGTFHALSRKMLIKANVRLRLINDFQQTDLLRRAYRDAMDPSLQIS
FDDARAYIDRIKAQVDPVLPSHDLEPCVDVYLRYQELLRQSGSADFADLMLLAVRGMRDG
SVPAYKAKFMLVDEFQDTDAVQFAWIREHIRQGTAVTVVGDDDQSIYEWRFGMGYQGMED
FRRLTQAAHVSLDTTYRCAREIMDPAARLIAFNTERVHKSLNTANQTKGSVQVKPFADKE
EERSAIAQAIVASGKPGDWAVLARTNAQLEFVEQFIAGRLPVIRSGGTSFWELRGPAMYL
SLCRALCNGAMGDLDPVLKRSGISESRIETMHAEYRSREAGAVQRFLAAKKGGSSKDPED
RLRILMNQWRSMLASGETNLALHGIAHYMKTSIRLYERDRKPEDQVKDDLRMDNCAAALA
RIHGTLHQRLLLLQQESKKTGEAVRLMTFHSSKGLEFPNVWIMGCEEGVIPSSNSPLEEE
RRLFYVGMTRAKSHLLLSYVINEKAPPSRFLKEADLL