Protein Info for LRK55_RS17715 in Rhodanobacter denitrificans MT42

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00106: adh_short" amino acids 9 to 193 (185 residues), 127.4 bits, see alignment E=1e-40 PF08659: KR" amino acids 9 to 167 (159 residues), 32.7 bits, see alignment E=1.4e-11 PF13561: adh_short_C2" amino acids 12 to 200 (189 residues), 90.3 bits, see alignment E=3.1e-29

Best Hits

KEGG orthology group: K07124, (no description) (inferred from 55% identity to hne:HNE_3380)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>LRK55_RS17715 SDR family oxidoreductase (Rhodanobacter denitrificans MT42)
MMPARPLSLITGASSGIGAAFARQLAALGHDLVLTARRVDRLQALATELHERHATQATVL
PHDLAALAAPQVLCDELERRGLQVDWLINNAGYGVPGTFVANDWTTHAHFLQVLLAAPTE
LAWRLLPGMRQRGHGRVINVASLAGHVPGPAGHTLYAASKAYLIKWSQSLALENHTAGVN
VCALCPGFTWSEFHDVTGTRDKMNRLPGFMWLSAEEVVRQGIAAVERGDAVYIPGRVNRT
IKTLVQLLPDRLALWLSARESKRYRNT