Protein Info for LRK55_RS15750 in Rhodanobacter denitrificans MT42

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 286 to 307 (22 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 212 (211 residues), 78.6 bits, see alignment E=2.2e-26 amino acids 201 to 372 (172 residues), 51.6 bits, see alignment E=3.7e-18

Best Hits

KEGG orthology group: K08223, MFS transporter, FSR family, fosmidomycin resistance protein (inferred from 74% identity to bgl:bglu_1g21870)

Predicted SEED Role

"Fosmidomycin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>LRK55_RS15750 MFS transporter (Rhodanobacter denitrificans MT42)
MLNDMIQSLILAIYPILKHDFQLSFAQVGLITLTFQLTASLLQPLVGMVTDRRPMPYSLP
VGMGFTLCGLLLLATAPNFPVLLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSLFQ
VGGNTGSSLGPLLAAWIIVPHGRGSVAWFSLAALLAIVVLLQVGRWYSHHHAVRRKAAAG
HFAILALSPRQIIGALAILGLLIFSKYFYLASLSSYYTFYLIHKFGVSVQSAQVHLFVFL
FAVAAGSLIGGPVGDRIGRKWVIWVSILGVAPFTLLLPHVGLMWTGVLTVLIGLVLASAF
SAILVYAQELIPGRVGMISGLFFGLAFGMGGIGAAVLGGLADTHGIDYVYRLCAYLPLMG
LITVFLPDIEKRAPAA