Protein Info for LRK55_RS15700 in Rhodanobacter denitrificans MT42

Annotation: DUF1415 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF07209: DUF1415" amino acids 22 to 188 (167 residues), 224 bits, see alignment E=5.4e-71

Best Hits

KEGG orthology group: K09941, hypothetical protein (inferred from 58% identity to mpt:Mpe_A1040)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>LRK55_RS15700 DUF1415 domain-containing protein (Rhodanobacter denitrificans MT42)
MNPTPANDLNADARPEGAPYLAATTRWLERAVIGLNLCPFARAPHVQGKLRLRVSHARDT
DALLDDLCGELQSLNALTPDECETGLLIHPFVLGDFLDYNDFLDVADAAVQALGLDGEWQ
VASFHPDYQFADSAPDDVENLSNRSPYPTLHLLRESSVESAMETMSDTDSIYRRNIETLQ
RLGADGWQALWRDDTD