Protein Info for LRK55_RS15550 in Rhodanobacter denitrificans MT42

Annotation: slipin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01145: Band_7" amino acids 22 to 191 (170 residues), 142 bits, see alignment E=1.1e-45

Best Hits

Swiss-Prot: 56% identical to PSTOM_PYRHO: Stomatin homolog PH1511 (PH1511) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: None (inferred from 69% identity to cti:RALTA_A2260)

Predicted SEED Role

"Putative stomatin/prohibitin-family membrane protease subunit aq_911" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>LRK55_RS15550 slipin family protein (Rhodanobacter denitrificans MT42)
MFGFVGVLVILGALLLFSAVKILPEYQRGVVLTLGRYTGTKGPGLVLLVPFVQRMIRVDL
RVTVMDVPPQDVISRDNVSVRVNAVVYFRVVEPDKSVLQVENFLQATSQLAQTRLRSVLG
QHELDEILSQRDSINHTLQTILDEATDPWGIKVANVEIKDVDLNETMVRAIARQAEAERE
RRAKVIHAEGEMQAAEKLRDAAAMLSQQPQALQLRYLQTLADMSNNGKSSTIVFPLPLDL
IKPLMEAFPAKADPAPNH