Protein Info for LRK55_RS14655 in Rhodanobacter denitrificans MT42

Annotation: winged helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 transmembrane" amino acids 430 to 450 (21 residues), see Phobius details PF00486: Trans_reg_C" amino acids 37 to 107 (71 residues), 55 bits, see alignment E=1.1e-18 PF00069: Pkinase" amino acids 149 to 351 (203 residues), 64.1 bits, see alignment E=2.1e-21 PF07714: PK_Tyr_Ser-Thr" amino acids 232 to 348 (117 residues), 24.5 bits, see alignment E=2.4e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (893 amino acids)

>LRK55_RS14655 winged helix-turn-helix domain-containing protein (Rhodanobacter denitrificans MT42)
MTLSHAVPEAPSLYRWSFGKTEFDEGRWQLSMEGVVVELERKPLDVLQYLLRHAGEAVTK
EELLATVWEGRIVVEAVLTNAIGKLRKALRDEEQELILTLPKVGYRLDAKVSRRVVEHVP
EASRLSVGDLVPRRGNWRLEQALARRGDGEVWLARHTKTGQTRVFKFSLDGFRLTGLKRE
VTVGRLLEQALGKRPDLVHVIDWDFEQAPYFIEFEYGGVSLDTWQEGGSGIEALPLETRL
ALFVEAANTVAAAHGVGVLHKDLKPANLLVYGEPSDWHLRVADFGSSRVFDPGLLDNLGI
TRLGLTQTQALSSDTGTPLYLAPEVMAGQVPTIRSDIYALGVTLYQLIVGDFRRPLAAGW
ESDIPDPLLRADIAAAANGDPARRPESVAMLAEGIRHLEQRRQKAALEASVRDRIAVAER
RAALARARRPWIAAAMLVLVAGTAVSLFYAHRSRQETKHALAATNEAKIEAAKAQKADAK
ATAINAFLVHNILGASNPMQSGSQTLTLQQALDQAEPKIHSSFVQHPDLEIDVRNTLINV
DGARGNWKHALDQNDKIIALVDAHPHDTTLAFEKTRALIMKSQGLLYLGRLKEFDAVITP
LLKQADDGQLSEPGLQTRTYYYAAERAMMAGEYTHSIHLLNKAHDAVQKLHLPGQPKAEL
GMKIQVDAELGQALSLAGRHNEAVTALNNLRKQVATQYGDAYPANLNVRDSLIGAEIAAN
HYADAQSDLDSLRRDSARVLGTDNPMSNHLDYYQGWIYLNQNLNNKALPFYAKAYTSMSS
HERSTDPETIMIGMQYADIARITGDRNQAVHLLDVFDAKIKPLPTETRTPLQDKVALVRG
CVLVDQGHGSQARTIAKAMDASVINTDDAAMQRLSGLTQSDAVQRTTCAVAMQ