Protein Info for LRK55_RS14395 in Rhodanobacter denitrificans MT42

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF03486: HI0933_like" amino acids 4 to 390 (387 residues), 491.3 bits, see alignment E=1e-150 PF00890: FAD_binding_2" amino acids 4 to 54 (51 residues), 39.3 bits, see alignment 2.5e-13 PF12831: FAD_oxidored" amino acids 4 to 141 (138 residues), 39.3 bits, see alignment E=2.6e-13 TIGR00275: flavoprotein, HI0933 family" amino acids 5 to 390 (386 residues), 419.9 bits, see alignment E=4.7e-130 PF13450: NAD_binding_8" amino acids 7 to 38 (32 residues), 26.6 bits, see alignment (E = 2.9e-09)

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 71% identity to psu:Psesu_2676)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>LRK55_RS14395 NAD(P)/FAD-dependent oxidoreductase (Rhodanobacter denitrificans MT42)
MKTDVLIIGAGAAGLMCAIAAGRRGRRVLVVDHTNKVGKKILMSGGGRCNFTNMGATPAN
YLSANPHFAKSALARYTPWDFIALVEKHRIAYHEKELGQLFCDDSAKQIVRMLLDECVAA
GVAVEANCGVQRVRKTPEGFSVLTARGELHAESLVVASGGLSIPSMGASGFGYELARQFG
HAVLPTRAGLVPLTLSGKHQEHYQDLAGVALPAVEARVGKQGFRGGLLFTHRGISGPAIL
QISSYWHPGDDLRIDLLPDLDAGAHLIEQRAARPLAELKTVLGDVLPKRLAQRLCEQWFE
SRPMRQYRDAELSQVGAQLNAWPITASGTEGYRTAEVTLGGVDTDGLSSSTMQSKLVPGL
YFIGEVVDVTGWLGGYNFQWAWASGQAAGQAA