Protein Info for LRK55_RS14375 in Rhodanobacter denitrificans MT42

Annotation: cytochrome c biogenesis protein DipZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 64 (25 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 117 to 143 (27 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details PF02683: DsbD_TM" amino acids 3 to 203 (201 residues), 29.4 bits, see alignment E=1.2e-10 PF08534: Redoxin" amino acids 273 to 385 (113 residues), 48.2 bits, see alignment E=2.6e-16 PF00578: AhpC-TSA" amino acids 275 to 378 (104 residues), 44.2 bits, see alignment E=4.5e-15 PF13905: Thioredoxin_8" amino acids 281 to 376 (96 residues), 27 bits, see alignment E=1.2e-09 PF17991: Thioredoxin_10" amino acids 428 to 573 (146 residues), 168.9 bits, see alignment E=2.5e-53

Best Hits

KEGG orthology group: None (inferred from 62% identity to hdn:Hden_1605)

Predicted SEED Role

"DipZ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>LRK55_RS14375 cytochrome c biogenesis protein DipZ (Rhodanobacter denitrificans MT42)
MLVLILAYLGGVLTILSPCILPVLPFVFARSDRPFMRNGLPMLLGMAITFAAVATLAALG
GGWAVHANQYGRYVAMLVLAFLGLTLLSTRLAEWITRPFVALGNRLSQRSAGDGDSVWAA
AGLGVATGLLWAPCAGPILGLLLTGAALNGASVHTTLLLLTYAAGAATSLGLALLIGGKV
FALMKRSLGAGEWMRRALGVLVLCGVAAIALGLDTGLLTRVSLASTGGIEQKLINAVRPA
PAPQPVLKAGEPLPVEGTLPSLAGATQWLNSPPLTTEALRGKVVLVDFWTYSCINCIRAL
PYVRGWADKYKDHGLVVIGVHAPEFAFEKDPANVTKAVKDLGVDYPVALDNDYAIWKGFN
NEYWPAHYFIDAQGQIRHHHFGEGEYRESEDVIRQLLADAGQKNLPGGYVSDDHRGVEAA
ASDDPTRSPETYVGYARAMNFVGGRVARDEAHDYHAPASLAVDQWSLDGRWTVRDENAQL
ERAGGRIVYRFRGRDLHLVLGPAADGKPIRYRVSIDGKPPGADHGMDTDADGHGTITSQR
LYQLVRQAHGSGERLFEIEFLDPGVQAYAFTFG