Protein Info for LRK55_RS14220 in Rhodanobacter denitrificans MT42

Annotation: cytochrome c oxidase assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 44 to 61 (18 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 27 to 264 (238 residues), 165.4 bits, see alignment E=7.5e-53

Best Hits

KEGG orthology group: K02351, putative membrane protein (inferred from 56% identity to brh:RBRH_03659)

Predicted SEED Role

"Inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (292 amino acids)

>LRK55_RS14220 cytochrome c oxidase assembly protein (Rhodanobacter denitrificans MT42)
MTATLLKWIVPWEFSWVLLACFVTAAVLYLRGSRRLPVSFGRRLAFWCGMAIIYLSLHTY
LDYYAEHEFFMHRIQQLLLHHIAPLLIVTAYPATVLRAGLPLAWRRRLLRPLQRSWPWRL
LGGVLLNPTVATLLFIAFILIWLIPSMQTLAMLDWRIYRFMNWSMLVSGFAYWSLVLDHR
PHPPGRMTAGLRVLSPAITMTPQIVAGAIVTFSKTDLYPIFEICGRAFTFNVLTGQLIGG
VIIWVPSALVESIGGLMALRMWLRLSRHGRLPRKPLRRPAARAAAVEARVPD