Protein Info for LRK55_RS14095 in Rhodanobacter denitrificans MT42

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 54 to 71 (18 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 137 to 153 (17 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 278 to 296 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 61% identity to sro:Sros_5689)

Predicted SEED Role

"FIG01042815: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>LRK55_RS14095 membrane protein (Rhodanobacter denitrificans MT42)
MDHESDATTIEPPSPPLAAGERVPPSLYFLVSAIFHYLGPAFAVLLFAHVAPLGVAWLRI
ASAALIFALWRRPWRYFAQQNAAVRWNIVALGAVLGGMNVCFYLAIDRLPLATVGAIEFL
GSIALAWAGLHSRRNGVALAVAAAGVAMLTHVRLAGTAIGFAFAFANCALFMLHIVLGHR
IARGGGGNGIDRLAAAMLVALLVVMPLGWREAAVAFTHPGLLAAGIGVGVSSSVIPYVCD
QLAMARLPRATFALMLALLPATACAIGIVVLHQLPGPAELTGIAMVIAGINLHRAAPR