Protein Info for LRK55_RS12870 in Rhodanobacter denitrificans MT42

Annotation: EpsI family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 38 to 62 (25 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 207 to 234 (28 residues), see Phobius details amino acids 243 to 268 (26 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details PF09721: Exosortase_EpsH" amino acids 52 to 303 (252 residues), 220.4 bits, see alignment E=2.8e-69 TIGR02602: exosortase" amino acids 68 to 300 (233 residues), 182.3 bits, see alignment E=1.7e-57 TIGR04178: exosortase/archaeosortase family protein" amino acids 210 to 304 (95 residues), 71.3 bits, see alignment E=1e-23 PF11984: DUF3485" amino acids 331 to 521 (191 residues), 89.5 bits, see alignment E=2.4e-29 TIGR02914: EpsI family protein" amino acids 357 to 519 (163 residues), 73.5 bits, see alignment E=2.2e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>LRK55_RS12870 EpsI family protein (Rhodanobacter denitrificans MT42)
MQCAARCSLRGCRRHCRVGGVLMSRPLAAVPVYSMRITGWVSAVAAFAVAVAVLLACYWR
TVQSLAWAWAHDGTYQYAFLIFPLSLWTAFGLRHQLQANPPVPSVWGLAAMAALVFVWYA
GRLLDVNLAQHFAFVALFPALVLACWGWRALWVLAFPLGYLVVFAVPWGDALVGPLQDIT
AHFSVRALELIGVPVLLNGREILTPSAVWLVAEACSGVKFFIACTALGCLYAYLMYRRWW
KRAVFVVLAAVTPVVANGLRVCFTVLIGETWGLKYATGTDHMIFGWQFFGTVLLLLLLAG
WFFRDPLVVPEQPPAHGGMPASARTVVWLVAFALLIAGPSLASGLAPPAPPQTMRLTAPA
IAGWSGPQAAADGWRPIFRGAAGQVRVSYQSVTGGDVVELFHAVYTGKPRRGHTLITYGN
DLYDSAHAQILSSASRRVELADGRSTTVGELRLAGATGSRLVWYWYCVDRRCTRSPALTK
LLQAWSVLQGQVPRSSVWALSSSVAGDDADRVRTKLHAFAQVLPVPGASGVQAQQPAVLA
GSQP