Protein Info for LRK55_RS12825 in Rhodanobacter denitrificans MT42

Annotation: TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details TIGR03013: sugar transferase, PEP-CTERM system associated" amino acids 19 to 466 (448 residues), 536.8 bits, see alignment E=4.9e-165 TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 20 to 466 (447 residues), 391.6 bits, see alignment E=6.1e-121 PF02397: Bac_transf" amino acids 275 to 460 (186 residues), 219.5 bits, see alignment E=1.2e-69

Best Hits

KEGG orthology group: None (inferred from 45% identity to tbd:Tbd_0199)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>LRK55_RS12825 TIGR03013 family PEP-CTERM/XrtA system glycosyltransferase (Rhodanobacter denitrificans MT42)
MYGLFRFRALHWQLLLVSVEFVLLLASVYAAVVLRYLGDAGAQDAFRQALHWRGLLVAAM
LIVSMTALGLYQIHLRAGWLGRLSRQGVAFLLGGIALTVVYYMAPPAYLGRGVLGITLVV
GYVVVALWRAAFLEFVDADLFKRRVVMFGAGECAVEVSHKMRRRTDQRGFKVLGYVPVGT
DPVSISAPLLLHPDGALYEWAARFGVDEIVVGPDDRRSTLPVDALLECKQRGVAVTELTE
FFEREAGRIKMDLTNPSWLVFSDGFNSSPVRRTIKRAFDVVVAALVLLVAWPLMLLTALA
IRLESGRGVPILYHQERVGENGELFSLIKFRSMCIDAERDGVARWASKNDGRVTRVGHFI
RNARLDELPQLWNVLRGDMSIIGPRPERPQFVADFNTRICYYRLRHCVKPGLTGWAQLRY
PYGSSLEDAEQKLNFDLFYVKNHNLVFDLAILVQTVEVVLFGRGAR