Protein Info for LRK55_RS12650 in Rhodanobacter denitrificans MT42

Annotation: DUF2066 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF09839: DUF2066" amino acids 28 to 235 (208 residues), 105 bits, see alignment E=2e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>LRK55_RS12650 DUF2066 domain-containing protein (Rhodanobacter denitrificans MT42)
MRLFRLLIVTLLLVFATLPAAHAQVASSPYAVVVPVADTSDAQRDQAFATALGQVLTRVA
GGQDLRGNAGYGDALGKAASMVQKFQYQRAATGLVLEVEFEPGSVRRLVSKLGVQSAGIK
PPVLLLVRGSDGRLLDQSALASLAATAGARGTNVVYPDGNVPDPAKVAAADPAALMAVNR
QYHTGLVLLGKLREGGADWTLISGGQAQRWSGQGASDAALLGDAGNGLVDRLGRQLNVIG
AGPSEGKLWVSGLDSAMDYANLVATLEDDPSVKLVQTLGAQNDGVLLYVKASAPISALAA
NLAASGHLLLQGEPHPGADANLRWLR