Protein Info for LRK55_RS12340 in Rhodanobacter denitrificans MT42

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 233 to 257 (25 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 387 to 409 (23 residues), see Phobius details amino acids 415 to 433 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 17 to 412 (396 residues), 186.3 bits, see alignment E=1e-58 PF00324: AA_permease" amino acids 20 to 406 (387 residues), 130 bits, see alignment E=1.1e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>LRK55_RS12340 amino acid permease (Rhodanobacter denitrificans MT42)
MNPSSRTAYARSLRPRDAALVVVGGIIGGGIFLNPGIVAQRTESGLALLLMWVAAGVLTL
IGALCYAELGARRPHAGGSYVYLREAFGPLAGFLFGWTMLLVIYSGSSAAVATIFASYTA
ALFGLQSAWALPLTVGGLVFVSAINLFGIRLGAQIQNLFALLKLLAVAVLVACGLFLAGA
GAGHGQLLAADPARQGVGFIGAALPVLFAYSGFTYLNNLAGEVREPQRTLPRALALGMGL
VIVAYALVNVAYLAVLGHAGLAASTAPAADVMQQVAGPVGAKLIALGVAISTLGFCNITL
VAGARVLQVMGEDGLFFRAVARLHPRWRTPNTALLLLSGWAVVLALSGSYGQLLDYATFG
DWLACAIGVATLFWYRRHDRASGGFRVPGYPWLPLLFIAAVTAVVLLSLRDNPRNSGIGL
LIMLAGVPVYALWRHLFSRTLP