Protein Info for LRK55_RS11920 in Rhodanobacter denitrificans MT42

Annotation: penicillin-binding protein activator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04348: LppC" amino acids 50 to 603 (554 residues), 337.2 bits, see alignment E=2.1e-104 PF13458: Peripla_BP_6" amino acids 255 to 434 (180 residues), 46.2 bits, see alignment E=5.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>LRK55_RS11920 penicillin-binding protein activator (Rhodanobacter denitrificans MT42)
MRFMRLSRVAAIALLFSLVLAACVPANTPRSPAELAAAQSAEALSRQGQFDQAAQAWLAL
AAQSRGHADSYRLLAAEAWREEGRLERVAPVLAEIKRQRLSGDEPLRFDLLQAELALDRH
DAATALRLTTQPNVAVPQALQLRLLEWRARAMAASGDRWGAARTRVQMDGQLSGYDHTQN
RQQILDLLGQVGVESLKQRAAAMQRGDRMLPWVNEALNQLGVAVAQPPPDLQQPVGTLLP
GAGANVREGYKAPSQVALLLPSDGNYAAASTAIREGFFAAYLDAGRNHAPRPSVRVYDSQ
GTADGAVKAYQQAVSDGARLVVGPLTRGEVAGVFSQARLPVPLLALNHPDDKQLPAGDAS
EFGLLPETEGAQAADHMVERGLRRVYAMVSTDDFAQRAAGAFKAELAARGGELAGTVTLP
PGVTSYADLIAGLKLPTGTNAPPAAAVEPATAGTAAAAALSGAVSDAGIFISMRPEQARL
LLPQLRIAQVNLPVIATSHVYAGSDDVAANRDLDGVEFCDAPWLFDAQPGLPNREGIAAR
LPAARGGAARLFAFGMDAWNLVPYLEWLRAHPGSYVPGASGQLAADQFGRVRRVLIWAQF
QNGLARPLGGSLQLDDVPSNAPPASAEPAPSSSPSSGTFQPAAD