Protein Info for LRK55_RS11675 in Rhodanobacter denitrificans MT42

Annotation: TIGR00366 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 52 to 79 (28 residues), see Phobius details amino acids 95 to 122 (28 residues), see Phobius details amino acids 137 to 161 (25 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 342 to 367 (26 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 432 to 457 (26 residues), see Phobius details PF02667: SCFA_trans" amino acids 6 to 448 (443 residues), 301.9 bits, see alignment E=4.7e-94

Best Hits

KEGG orthology group: K02106, short-chain fatty acids transporter (inferred from 80% identity to smt:Smal_3807)

Predicted SEED Role

"Short chain fatty acids transporter" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (462 amino acids)

>LRK55_RS11675 TIGR00366 family protein (Rhodanobacter denitrificans MT42)
MARAALRSAAWAERWFPDAWVFAALGVVVVALAAFSFGATPTATVTAFGDGFWSLIPFTM
QMAFVVIGGYVLATAPVVARFIDVLARAPRTGRGAIVYIALVSMLASLLSWGFSLVFGGL
LVRALARRGDLHMDYRAAGAAAYLGLGAIWAMGLSSSAAQLQANPASMPPGLLAITGVLP
FSQTIFLWQSIVLTAVLIVVSLLVCWFTAPSDANARTSRDFDVGETSTPALPPRTRPGEW
LEYSPALSMAIGLLGLGWLGHEFASKSAVTAIANLNTYNFLFLTLGILLHWRPRSFLDAV
SRAVPSTSGVLIQFPLYGGIAALLTHVPGADGATLAHRLSNLFVHVAGTESFPAVMGAYS
AILGFFVPSGGGKWLVEAPYVMQAANDLHVHLGWAVQVYNAAEALPNLINPFWMLPLLGV
LGLKARDVVGYTFIQLVVHVPLVLGMLWLLGLTLSYVPPVMP