Protein Info for LRK55_RS11195 in Rhodanobacter denitrificans MT42
Annotation: serine hydrolase domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 63% identity to smt:Smal_2923)Predicted SEED Role
"Beta-lactamase (EC 3.5.2.6)" in subsystem Beta-lactamase or Tn552 (EC 3.5.2.6)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 3.5.2.6
Use Curated BLAST to search for 3.5.2.6
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (349 amino acids)
>LRK55_RS11195 serine hydrolase domain-containing protein (Rhodanobacter denitrificans MT42) MPKLLAGLALTLLLGGCASGTKPVDPIDALMQRYSGDVPGASLLVLKDGKPIVRRSYGLA NLEDGDKATPATNYRLASVSKQFTATAILLLAESGRLKLDDPVRRWLPSLPETTAAVTLR QLLTHTGGLVDYEDLIPPGTSGQVSDNDVLRLLSATPKTYFAPGTAYRYSNSGYVLLGLV VERASGISLPLYLRQHIFQPLHMDHTLLYERGGPEVENRAYGYSEENGGWTRTDQSVTSA TRGDGGIYSSIDDLAKWDAALYDDRLLSAASRKLAFSPHVKVTGEPYEASYGYGWRITGD TLWHSGESIGFRNVIVRWPKQRLTVILLSNRNEPEPYRTALAIAAPYLQ