Protein Info for LRK55_RS10820 in Rhodanobacter denitrificans MT42

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 984 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF07715: Plug" amino acids 68 to 173 (106 residues), 80.7 bits, see alignment E=5.6e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (984 amino acids)

>LRK55_RS10820 TonB-dependent receptor (Rhodanobacter denitrificans MT42)
MKLGVTKLSSAVRLALSLGAVIAVGASGTVFAQDTGSQDTTTKPSQEKAQTLQTVVVTGS
HIRRVDLETSNPVVTIDAAQIKATGKLTLGDIVQQLPAVTGGNINPQVNNSGGTGGSSIG
LRGLGAQRTLILIDGKRIINGDPNSIPADMIERIEVLTDGASSVYGSDAIGGVVNFILKK
DYQGAQFTVNYGQSGHADGRSKGYTFTFGQTSDKGSIMGGVDYNKTEAVLAKNRDFSKNA
VSIYGSSQTPIYSYVGGSSFPAYGRVQLPSQYRGTGPGQYNCKNVALNPGASGQNIATDY
HCFTNADKYNYATVNLIQTPQERTSLWLKGTYNLGDHVQTYMDAYHNKTSSGFQLAPALL
GSIYGAVISKDAYYNPFGQEYSGAGLDYRARLVSAGNRSANFGTTTDQIHTGFKGDFNLL
NHDWNWDVGMSYGHFSQQTITRGLPNQQKINADLGPSFLDPATGKVTCGTPTAPITSGCT
PFNPFNLFDPNSVAALQAAAVPAISNNFAIERVYSADVNGGLFDLPAGTVQLAAGASYRK
EYTRSEIDPLLLIDPATGNCTLGSQCSSPLRGGYNVKEAYAEVFVPILSDLPFAQMLNVT
IGDRYSKYSTFGSTNNTKFAVEYRPITDLLLRGTMSEVFRAPTIGNVFGAPISDAPKLSS
DPCDGITAANPACVGVPTNGSFVNQDVALGQQIKGISSGSQYAGFPLGPEKGKSFDLGFV
YSPSYVPGLSLSADAWHLYLNDTISSIGAQTVLDLCYNGATQYCPLITRFPASSANPGQI
AQIVEPTGNLGRTDVAGVDFSGRYSLPEFSFGKFVVGLDATYMSRYDQQTAPGTNANTVF
HDAGHFMPFGSSQASTCPSGGGVCLFPRWRGNGFVNWNLGDWSASWRMRYIGAFRNGSKS
PSQDTNPVQGLPGVVLKYGATIYNDVSLGYNFEPLNTRIDVGVNNLFDKQPPFLYANNTL
NANTDPSDFDLQGRYYWARVTVSF