Protein Info for LRK55_RS09530 in Rhodanobacter denitrificans MT42

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 241 to 254 (14 residues), see Phobius details PF13175: AAA_15" amino acids 1 to 40 (40 residues), 33 bits, see alignment 8.1e-12 amino acids 198 to 301 (104 residues), 55.1 bits, see alignment E=1.6e-18 PF13304: AAA_21" amino acids 229 to 301 (73 residues), 55.7 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 56% identity to sml:Smlt3034)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>LRK55_RS09530 ATP-binding protein (Rhodanobacter denitrificans MT42)
MELIRLKVEGFKKVHEIELDLADVNILVGANGSGKSSVLQSTHLGCCLIRQADRVDPMRT
NTVSIEELDYLPTDDYKTLGHNSNWGNGTGSPSSNLSITFRKDDATEVTASCRIRSARNA
GISVSGTVPVDASNLLRQKKKFFSAYIPGISGVPNKEERRSKKVIMKACSFGDSNVILRN
ALLLLKEENDQNISQIEEWLSRVIDPVSITVTHDDAQDLHIRCWISYQGLDRPIELAGTG
FLQLIQIFCYVLLFNPGILLIDEPDIHLHPNVQEKLAGVLAEIARARKMKVLMTTHSPFI
VRGAPVDAKVYWLQEGAKKSEDRSAVELAIGWGAFGKRAILISEDADVSFLRKIVSQWPE
IERNVAFFPGNGFKNLPTPEQAKELHDSLGSKFKIIVHRDRDALTDDEVNQITGKYRDLG
VDVWFPKGSDVESYFCFPQFVEWFLNCTLAEAQGHVASVLAQSAIPIRQQFDKQRASHNE
EIHKQGGSPTNNDVWAAFQARELRGAKGKFVLGQLKNQIGQQVFAPDKILASKLNGQVAV
DLKHMIEQVLAI