Protein Info for LRK55_RS09220 in Rhodanobacter denitrificans MT42

Annotation: carboxymuconolactone decarboxylase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 PF02627: CMD" amino acids 43 to 108 (66 residues), 37.5 bits, see alignment E=9.5e-14 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 59 to 102 (44 residues), 34.9 bits, see alignment 4.1e-13

Best Hits

KEGG orthology group: None (inferred from 52% identity to mmt:Metme_3573)

Predicted SEED Role

"Macrophage infectivity potentiator-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>LRK55_RS09220 carboxymuconolactone decarboxylase family protein (Rhodanobacter denitrificans MT42)
MSEFTLQTPDTAPGAARALLQGVQKQRGFVPNLYANLANAPAALEAYFGLSSQFDKTSFN
PVERQVVLLTASVENGCEFCVAAHSMIARKMAKAPDDVVDALRNRTTVPDARLQALSSFT
RSMVKERGWVAGAPLEAFLKAGFTHQQALEVVLGVSMKTLSNYANHLTGTLTNKEFSGEA
WHRPA