Protein Info for LRK55_RS07305 in Rhodanobacter denitrificans MT42

Annotation: Fic family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 284 to 303 (20 residues), see Phobius details PF02661: Fic" amino acids 178 to 286 (109 residues), 67.2 bits, see alignment E=9.5e-23

Best Hits

KEGG orthology group: None (inferred from 50% identity to gau:GAU_0184)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>LRK55_RS07305 Fic family protein (Rhodanobacter denitrificans MT42)
MKLPMPPPALGDLFERSDVRKILLGKLGPEVKGRYEHWDQLRHLTPPENLTPEEWWLGIK
MARRGLRQEMPLKDKAGNPFTVVLSDSIQRNLFLIGRDAAGALRGQEASQSEVTREHYLV
RSLMEEAMTSSQLEGAATTTQVAKDMLRSGREPRDYGERMIYNNYLAMRELKAWSQRPLT
PAAVFEIHRKLTDGTLDDEGCAGRFRLPSEDIVIEDETGRVLHVPPPARELEQRLQSLCD
FANQSDDGEHFVHPVVRAILIHFQIGYDHPFVDGNGRTARTLFYWSLLRSGFWMAEYLSI
SSILKRAPAQYMRSYLYTETDEGDTTYFVAHQLTAILEAIDGVHRYITRKQNEQAAAAAL
LKPGSPWAHQINHRQRALLLNALKNPGKVFTIEMHRRSHGTSYQTARADLLALVAEGFLR
QSREGKAFVFVPVPDLEKRLHA