Protein Info for LRK55_RS07285 in Rhodanobacter denitrificans MT42

Annotation: DUF1295 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 23 to 24 (2 residues), see Phobius details amino acids 31 to 53 (23 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 189 to 218 (30 residues), see Phobius details PF06966: DUF1295" amino acids 22 to 247 (226 residues), 232.8 bits, see alignment E=4e-73 PF02544: Steroid_dh" amino acids 128 to 253 (126 residues), 29.5 bits, see alignment E=7e-11

Best Hits

KEGG orthology group: None (inferred from 68% identity to smt:Smal_1952)

Predicted SEED Role

"FIG005069: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>LRK55_RS07285 DUF1295 domain-containing protein (Rhodanobacter denitrificans MT42)
MNACWQLLIVWALAAAMMSLGWRWQRAHANAGIVDVLWAAGVGGSAVLLAITGSGTPWTR
LLLAVLGGLWGSRLAVHLWRRVRGEPEDGRYRSLRAHWHGSQWKFFAFFQFQAVLIVLFA
LPFVAVSRNPAASGPWLLVAAAIWLLGVVGEAIADAQLARFRSDPANRGHTCRQGFWRYS
RHPNYFFEWLHWFAHVCLAIGSPIAWLAWSGPLVMYVFLRWISGVPYTEAQALRSRGEDY
REYQRTTPMLIPWFPRRNDR