Protein Info for LRK55_RS07140 in Rhodanobacter denitrificans MT42

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 789 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 353 to 376 (24 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details amino acids 411 to 429 (19 residues), see Phobius details amino acids 596 to 613 (18 residues), see Phobius details amino acids 620 to 636 (17 residues), see Phobius details amino acids 643 to 664 (22 residues), see Phobius details amino acids 669 to 690 (22 residues), see Phobius details amino acids 718 to 737 (20 residues), see Phobius details amino acids 746 to 771 (26 residues), see Phobius details PF03176: MMPL" amino acids 591 to 770 (180 residues), 60.7 bits, see alignment E=1.2e-20 PF00873: ACR_tran" amino acids 615 to 768 (154 residues), 36.3 bits, see alignment E=1.5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (789 amino acids)

>LRK55_RS07140 efflux RND transporter permease subunit (Rhodanobacter denitrificans MT42)
MRRVLDLGAIISAFAIRHRVKVCVVIALITVIFAACLTRLDVHTRFGDMVPRNHPYVQVY
EKYQDTFAAANRVTVLVRATHGDIFNLPILGEIQRITNELQKVSGVNQSQITSLASSKLK
RVDASSEEIESKPLMWPGLPQNQAEIDTLRKAVLDNPMVYGLYVDRDLESALIHVDFYNH
LVDYQKIFPQIQNILDASPIHDKVELQMIGEPILYGWVAHYLGETVSIALLSLMAMLVLL
FMITRTWRGTLLPLIAGLVSAIWALGIGSILGYNFDPLIIVVAFIITARAFSHSVQLITR
FDDLAVGEKINPRYAAQDSMRELFRPGMLGLWADAGAILCVILTPIPLMHKVAIIGSIWV
LTISISAVILTPVLLSWIKTPDRYIHPLRLGGILSVFTRSATWAVTSRARYAVAPLTGLL
LVGLLLETTHLTVGDASAGSPILWQDSAFNVASTQVNNRYPGSEQMFIAIEGDQPDALKR
TEVLNWMMQFQRYMERQPEIGGTVSLADVVTEVRRNLHEGNPRYRELGGSALENGELLNF
YLQGSSPGDLNQYTDVQFQNGAVTMFFHDHKGETLRQAIYNAGRFIGENELPHAKALLAG
GVLGNIAAVNEILLRDQVEAIALAFLVVVLCCLVGYRSSVSGIFFIIPVFISNVVTFAFM
AWHGIGMSISTLPVVALGIGLGVDYAFYIVDGIKEHLENNPLATPEDAVRQSLGSAGRGV
ILTALVLAAGVLLWSWSSLRFQAEMGILIGIWLLTSAFTALYVMPSLALVFKPDFIFKKA
ELVALAHST