Protein Info for LRK55_RS06895 in Rhodanobacter denitrificans MT42

Annotation: ankyrin repeat domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1146 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 73 to 95 (23 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 169 to 194 (26 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details PF12796: Ank_2" amino acids 269 to 365 (97 residues), 28.4 bits, see alignment E=5.1e-10 amino acids 345 to 427 (83 residues), 31.9 bits, see alignment 4e-11 amino acids 416 to 497 (82 residues), 34.5 bits, see alignment 6.3e-12 amino acids 441 to 530 (90 residues), 42.1 bits, see alignment 2.6e-14 amino acids 504 to 587 (84 residues), 32.3 bits, see alignment 3e-11 amino acids 761 to 835 (75 residues), 43.4 bits, see alignment 1e-14 amino acids 863 to 947 (85 residues), 37.9 bits, see alignment 5.5e-13 amino acids 911 to 984 (74 residues), 40.8 bits, see alignment 6.7e-14 amino acids 958 to 1033 (76 residues), 35.4 bits, see alignment 3.3e-12 PF00023: Ank" amino acids 368 to 399 (32 residues), 15.9 bits, see alignment (E = 3.5e-06) amino acids 468 to 498 (31 residues), 18.6 bits, see alignment (E = 4.6e-07) amino acids 756 to 788 (33 residues), 22.3 bits, see alignment (E = 3.1e-08) amino acids 789 to 822 (34 residues), 18.5 bits, see alignment (E = 5e-07) amino acids 955 to 985 (31 residues), 27.5 bits, see alignment (E = 6.8e-10) amino acids 1072 to 1102 (31 residues), 15.4 bits, see alignment (E = 4.7e-06) PF13637: Ank_4" amino acids 467 to 519 (53 residues), 23.9 bits, see alignment 1.1e-08 amino acids 758 to 801 (44 residues), 27 bits, see alignment (E = 1.1e-09) amino acids 956 to 999 (44 residues), 30.1 bits, see alignment (E = 1.2e-10) PF13606: Ank_3" amino acids 756 to 784 (29 residues), 19.1 bits, see alignment (E = 3.5e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1146 amino acids)

>LRK55_RS06895 ankyrin repeat domain-containing protein (Rhodanobacter denitrificans MT42)
MTQPKSRRRPPLLHALAWFIPGWFAVAVAGLVTHPLTLVPLLLANALTMAAICHAIGFDP
EPRFGRTVLRRGAAHLVMFTGYTVLVFVLVAWPMLQLTHQPSLSAALVLAAALVLALVAL
WRLWPAFGLVFVWDDAYPSQRDGSWIFTATLRSIAFGRHLSREERFFSHFLPAAFALLVL
AFGAIALTGLYGVLPPEPRVAALAIYGVLLLPLGCLVIANRTLRALLCERQQPRRRGDHD
PHAATAPRPVLSEQERTAGTPEQAAALLAATRDGDIERALALVEAGADPDTAPPGDDRDQ
RPVLMLAALLPDTHLLRALIAKGADVNRASGGITALLAATRDSWHGRAEAVLTLLANGAS
PLVTDAEGNTPLHGAVLSADAGVAAMLLDAAAPINALNKAGVSPLATACRAANWPLVKFL
LERGAKPAPADGEPALVAAAGIADDDAEGVKLLLKHRAAVNAVDARHRHALLAAAAEGHE
QIARALCAAGADVNLVDRHGSSALMEAARAGAGGIVQRLAEAQADAGLRDGHGRDALTLA
CQSPRAHADTVRALLALGAEPKAAGGDGRSALDHAAGAGRWDLVALLDPDTPLPASLSQD
VLGEGSDTPAHLLDALRFGHWAIVSGFVERVRDWPQTELARLYLELAAPGLGAARRWLLD
HGLDAEARLEAPRIDDAETADAPSLPPLGQRLFDALLPQLPDATEALDDLLQAGASPAGA
GLLAQALAHSNGAAEGAALPLSLLERGADPFGADAHGRTPLQLAVVNGQLPLLQALLARG
GDPNTRDRDGRTPLFAALEHGAQALPLVRALIAHGANPEATDANGETPLGLALEHPAVER
WLDWRDWPRPNRALRADDLPAVARAGALASVQRLLELGFAVDTRDGQDATALLHACGAGH
RDIAACLLDAGADPSLAARSGVTPLAAAVAARRETLVALLLQHEVAVDQRLPNQATALMV
AAAMGYPDIAEQLLDAGADVNAVDDAGRSALHAAAQFGFEHNDSLRARRLFDGLLKRGAD
INHADNEGKTPLLLLLGAQLRPGSECDATHIGALVPLLLEAGARAEHADQRGVTALHACA
MHALLPPARVLLSRGADRNAADAFGRTAADVARQLGYVDIAHELAARSSAIPSVRQTLRQ
PAQPSD