Protein Info for LRK55_RS06755 in Rhodanobacter denitrificans MT42

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00005: ABC_tran
  • amino acids 28 to 172 (145 residues), 112.8 bits, E=2e-36
• PF13304: AAA_21
  • amino acids 138 to 201 (64 residues), 29.9 bits, E=5.8e-11

Best Hits

Swiss-Prot: 62% identical to YADG_ECOLI: Uncharacterized ABC transporter ATP-binding protein YadG (yadG) from Escherichia coli (strain K12)

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 66% identity to xal:XALc_3008)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Protein Sequence (321 amino acids)

>LRK55_RS06755 ABC transporter ATP-binding protein (Rhodanobacter denitrificans MT42)
MSPQSQDKAPALVVDNLRKTYGNGVEALKGISLTVQPGDFFALLGPNGAGKSTLIGILSS
LVNATSGDARVFGISVNRQRSEAMRLIGLVPQEINFNQFEKPFDICVNEAGFYGIPRKIA
AERAEKYLKELRLWDKAQMQARTLSGGMKRRLMIARAMMNEPRLLILDEPTAGVDIEIRR
SMWQFVSAINAAGTTVILTTHYLEEAESLCRNIAIIDHGTIIENTSMKRLLATLDVETFV
LDVTTIPAELPSIPNVTLRRRDDHTLEAEMARSHDLNSLFATLSAHGIAVTSMRNKTNRL
EELFVRLVENGRHEPGRERAA