Protein Info for LRK55_RS06040 in Rhodanobacter denitrificans MT42

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 75 to 99 (25 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details PF03741: TerC" amino acids 15 to 203 (189 residues), 149.2 bits, see alignment E=5.6e-48

Best Hits

Swiss-Prot: 56% identical to YGDQ_ECOLI: UPF0053 inner membrane protein YgdQ (ygdQ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 79% identity to psu:Psesu_0186)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>LRK55_RS06040 TerC family protein (Rhodanobacter denitrificans MT42)
MELLANPETWIALATLTALELVLGIDNIIFISILAGKLPPAQRDKARRAGIVLAAVTRLG
LLLAIAWIVGLTAPLFSLFGHAFSWRDLILLGGGLFLIGKATHEIHQKLEGATEQVTVGT
AAATFGGVVAQIMLLDIVFSLDSIITAVGMVDERWIMVTAILASIGFMLAFARPIGEFVE
RHPTVKVLALSFLIMIGLVLMADGFGQHIPKGYIYAAMAFSVFVELVNLAIRRRANRALA
PVALHEKYARDEAD