Protein Info for LRK55_RS05425 in Rhodanobacter denitrificans MT42

Annotation: glucose-1-phosphate thymidylyltransferase RfbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00483: NTP_transferase
  • amino acids 6 to 242 (237 residues), 264.6 bits, E=9.4e-83
• TIGR01207: glucose-1-phosphate thymidylyltransferase
  • amino acids 6 to 290 (285 residues), 509.6 bits, E=1e-157
• PF12804: NTP_transf_3
  • amino acids 7 to 137 (131 residues), 40.3 bits, E=3.9e-14

Best Hits

Swiss-Prot: 76% identical to RMLA_XANCP: Glucose-1-phosphate thymidylyltransferase (rmlA) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K00973, glucose-1-phosphate thymidylyltransferase [EC: 2.7.7.24] (inferred from 77% identity to xcv:XCV3708)

MetaCyc: 66% identical to glucose-1-phosphate thymidylyltransferase 2 (Escherichia coli K-12 substr. MG1655)
Glucose-1-phosphate thymidylyltransferase. [EC: 2.7.7.24]

Predicted SEED Role

"Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)" in subsystem Rhamnose containing glycans or dTDP-rhamnose synthesis or linker unit-arabinogalactan synthesis (EC 2.7.7.24)

MetaCyc Pathways

• O-antigen building blocks biosynthesis (E. coli) (10/11 steps found)
• dTDP-β-L-rhamnose biosynthesis (5/5 steps found)
• dTDP-3-acetamido-α-D-fucose biosynthesis (4/5 steps found)
• dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis (4/6 steps found)
• dTDP-4-O-demethyl-β-L-noviose biosynthesis (3/5 steps found)
• dTDP-β-D-fucofuranose biosynthesis (2/4 steps found)
• dTDP-6-deoxy-α-D-allose biosynthesis (2/4 steps found)
• dTDP-N-acetylthomosamine biosynthesis (2/4 steps found)
• dTDP-N-acetylviosamine biosynthesis (2/4 steps found)
• dTDP-L-daunosamine biosynthesis (3/6 steps found)
• dTDP-sibirosamine biosynthesis (3/6 steps found)
• dTDP-α-D-mycaminose biosynthesis (2/5 steps found)
• dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis (2/5 steps found)
• dTDP-β-L-digitoxose biosynthesis (3/7 steps found)
• dTDP-β-L-olivose biosynthesis (3/7 steps found)
• dTDP-D-desosamine biosynthesis (2/6 steps found)
• dTDP-β-L-4-epi-vancosamine biosynthesis (3/8 steps found)
• dTDP-β-L-megosamine biosynthesis (3/8 steps found)
• dTDP-β-L-mycarose biosynthesis (2/7 steps found)
• dTDP-α-D-forosamine biosynthesis (3/9 steps found)
• dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis (3/9 steps found)
• superpathway of enterobacterial common antigen biosynthesis (3/10 steps found)
• superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis (7/19 steps found)
• superpathway of novobiocin biosynthesis (4/19 steps found)
• superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis (13/33 steps found)
• superpathway of erythromycin biosynthesis (2/19 steps found)
• superpathway of megalomicin A biosynthesis (3/22 steps found)
• superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis (3/23 steps found)

KEGG Metabolic Maps

• Polyketide sugar unit biosynthesis
• Streptomycin biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.24

Use Curated BLAST to search for 2.7.7.24

Protein Sequence (296 amino acids)

>LRK55_RS05425 glucose-1-phosphate thymidylyltransferase RfbA (Rhodanobacter denitrificans MT42)
MNNTQKGIILAGGSGTRLHPITRAISKQLLPVYDKPMIYYPLATLMLAGIREVLVINTPH
EQSMFQRLLGDGSQWGIDIHYAAQPSPDGLAQAFTIGRDFVDGKPSCLVLGDNIFYGHGF
TERLKRAAAREHGATVFGYWVKDPERYGVAEFDAAGKVIGLEEKPAQPKSHYAVTGLYFY
DARVCDYAASLKPSPRGELEITDLNRCYLDDDSLHLEQLGRGFAWLDTGTHESLMEAGNY
IETIENRQGLKVCCPEEIAYLNGWIDTEQLLALAAPLAKTGYGQYLQQLTTQGPAR