Protein Info for LRK55_RS05400 in Rhodanobacter denitrificans MT42

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 PF00005: ABC_tran" amino acids 53 to 185 (133 residues), 76.4 bits, see alignment E=3.6e-25 PF14524: Wzt_C" amino acids 312 to 442 (131 residues), 64.5 bits, see alignment E=1.1e-21

Best Hits

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>LRK55_RS05400 ABC transporter ATP-binding protein (Rhodanobacter denitrificans MT42)
MSSNDLSIRVSGLSKCYQIYDSPRDRLKQFVGPRLQRLAGRPPRQYFREFWALKDVSFEI
KRGETIGIIGRNGSGKSTLLQMICGTLTPTIGDVETNGRVAALLELGSGFNPEFTGHDNV
YMNGAVLGLSKEEVDERFDDIVAFADIGQFIEQPVKTYSSGMVVRLAFAVQATINPDIFV
VDEALAVGDEKFQRKCFARLEELKNRGSSILFVSHSPMSVIELCDKTLLLERGQRLLYGP
APEAVRAYQKLIYAPAEHQERMVQEYRLADQSGLDIKDIDSGKSAPTQEAIDSSDFDPGL
VPETTTVYPIQGAEIFSFQVVDSRQRVVNVLEPRGSYEFIVSGRFTADVAAVYFGIHIRS
TSGLVVTGQRYPEEGNYIGCARAGQNFRISFGFRMDVLPGIYFIGGGVWSNEEPNCLHRI
MDAIMIRVMPVDKQRSFGYVDISLNEPRLDIA