Protein Info for LRK55_RS04475 in Rhodanobacter denitrificans MT42

Annotation: class I SAM-dependent methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF13847: Methyltransf_31" amino acids 53 to 161 (109 residues), 40.8 bits, see alignment E=5.7e-14 PF13489: Methyltransf_23" amino acids 55 to 202 (148 residues), 48.3 bits, see alignment E=2.9e-16 PF13649: Methyltransf_25" amino acids 56 to 144 (89 residues), 53.6 bits, see alignment E=8.9e-18 PF03848: TehB" amino acids 56 to 129 (74 residues), 22.3 bits, see alignment E=2.4e-08 PF08242: Methyltransf_12" amino acids 57 to 148 (92 residues), 39 bits, see alignment E=3.4e-13 PF08241: Methyltransf_11" amino acids 57 to 150 (94 residues), 61.7 bits, see alignment E=2.6e-20

Best Hits

KEGG orthology group: None (inferred from 48% identity to pag:PLES_58541)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>LRK55_RS04475 class I SAM-dependent methyltransferase (Rhodanobacter denitrificans MT42)
MSDRVEHSTSVAAASGDAEPHGPSTVGLHDAKLGGWYREDSGELFRGMPIGGDDVVVDVG
CGAGVNSVFCARHGARVYAIDREPQVIREVRARLSVEGSGTHTALVSDANPLPLDEGMAT
RVICTEVLQHVDDPRQMLAELVRVGASGALYLLSVPGALQEGLQEKVLPPAYREQPGGAL
RVIGRDEFAQWVGEAGLVLVEQTQHGFFWSIWWALFWGCQVELYDPAHPVLDHWTAAWQA
LLDMPQGRRLKQQLDEFMPISQIIVARKP