Protein Info for LRK55_RS03875 in Rhodanobacter denitrificans MT42

Annotation: FtsX-like permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 253 to 274 (22 residues), see Phobius details amino acids 298 to 325 (28 residues), see Phobius details amino acids 345 to 368 (24 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details amino acids 414 to 439 (26 residues), see Phobius details amino acids 466 to 490 (25 residues), see Phobius details amino acids 705 to 727 (23 residues), see Phobius details amino acids 748 to 774 (27 residues), see Phobius details amino acids 790 to 812 (23 residues), see Phobius details PF02687: FtsX" amino acids 259 to 370 (112 residues), 39.2 bits, see alignment E=3.3e-14 amino acids 706 to 820 (115 residues), 47 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (827 amino acids)

>LRK55_RS03875 FtsX-like permease family protein (Rhodanobacter denitrificans MT42)
MKMLLLALRSLRREWHLPELRTLAASLVLAVVALGVVATLATRIERGMLASAAELIGGDI
GVSSPQALPPVFAERARRDGLQLARTASFPSVAFAHEQTQLLDVQAVDAHYPLRGKLELR
DAAGRTRNGHAPAAGEVYLDHRALVALGLQVGQPLQLGGRELTIAAELLRQPDGGELLAL
APRALMSLADAEQAGLLGTGSRARHRLLLAGAPAAVQTWRDWAQAAALPQGAELITPEQT
QERMRTSFDRAGAFLRLTALLSALLAGIAIALSAQRYARRKTAEVALLRALGTPRRRVLG
LLLGTLGALAVPATALGMLLALGLSQLAWLLASQLFGNVPTVLPLAPSFAAAAMGIAVLV
GFALPPLARLAEVAPVAVFRQSMQRRVRRFDALYLIPALVALGLIWSQSSSLTLAGILAA
SLLGVALIAALLAGALLWLARRIAPGAHPALRLGLAALARRPALSVIQATALSLGLCALL
LLAIVAPALLQGWRQELPADTPNWFALNLQDDQRAGFTQALVTVGGDQLNMLPLAVGKLT
AINGRPIDQLAFADERAKDWTDRQLRLSWADALPPSNQVIAGQWHGAQPAQAEVSIDTMW
RGMFALKIGDTLRFDVGEGRIDAKVSSVRKVDWSSFRVNFFLLLDPAHASELPHTWLASF
HLPRGHATGLAQLSRDYSNLSLVDVDSLLDRVREIVDRVGNAVRWILGFSLLAGALVLAA
ALAASAAERRHEAALLRTLGARRAQLRVAAACEFALLGLVAGLTAALGAAGAGVWLGQAV
FHIEHFVPPLWPLVGGAVGAGLVVMLLGLAGTRKVSRTPPMRLLREG