Protein Info for LRK55_RS03765 in Rhodanobacter denitrificans MT42

Annotation: S9 family peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 transmembrane" amino acids 41 to 60 (20 residues), see Phobius details PF02129: Peptidase_S15" amino acids 439 to 676 (238 residues), 43.8 bits, see alignment E=9.7e-15 PF00756: Esterase" amino acids 446 to 632 (187 residues), 28.1 bits, see alignment E=5.8e-10 PF20434: BD-FAE" amino acids 450 to 644 (195 residues), 41.9 bits, see alignment E=3.1e-14 PF00326: Peptidase_S9" amino acids 475 to 685 (211 residues), 177.1 bits, see alignment E=1.3e-55 PF01738: DLH" amino acids 478 to 669 (192 residues), 42.6 bits, see alignment E=1.9e-14 PF08386: Abhydrolase_4" amino acids 608 to 669 (62 residues), 24.5 bits, see alignment 8.4e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (692 amino acids)

>LRK55_RS03765 S9 family peptidase (Rhodanobacter denitrificans MT42)
MDEDRASAPPGDVRIQPDHLAPGGRTYCMELQGRKPMSCCLARTMLSAACLLLPAAAVAA
DLVPVEDFARHPLLTMPRLSPNGQYLAVNMNDPGGDSHMLAVYKVDDMKQPVSMLRLPKY
EIAADITWVSNTRLVVDKGKMYGSIDKPFLTGEVIATDLDGRNQDYLYGRDSLRYGSRAA
TRGTDRGWGFVESKPLPANGHFYMSTQSWENTGTSTLYDVDAGKNTRHLIGQISVGGMSF
MVGADGKAHFAYGRNDNYDYVVYQQQAAGWAKMTPAQVGGSFTPIFFTPDKQGIYAEYNA
GGGPTVLVAQDENGDNRKVLASDGFSSIGDIEWTAWPYQPFATAPATGVPKVSYLDPNLP
MAKLHRALSLKFPGDYVHFIDSSEDGGKVLFEVSSDRDPGTYYLIDTHHYKVLKLFATAP
WIDPARMAERRPLHFKASDGMELEAILTIPKGASQTNLPMILLPHGGPIGVQDDWSYDNG
AQFLASRGYLVLQVNYRGSSGRGEDFKEAGYLKWGTRIQQDLIDGVKWAIAEKYADPQRI
CVYGGSFGGYSAMMTTIRAPGLFKCAVGYAGIYDLKMMYKKGDVRESKSGRSYLNTVIGK
DDADLDANSPDKLADKIDVPVLLVHGEDDKRAPFAQAKAMRAALDAAHKPYEWLSKPGEG
HGFYDEKNTIEFYNRLQAFLEKNIGPGASGTR