Protein Info for LRK55_RS02905 in Rhodanobacter denitrificans MT42

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF00005: ABC_tran" amino acids 24 to 160 (137 residues), 96.9 bits, see alignment E=1.7e-31 PF13304: AAA_21" amino acids 128 to 190 (63 residues), 28.2 bits, see alignment E=1.8e-10

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 57% identity to sml:Smlt0364)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>LRK55_RS02905 ABC transporter ATP-binding protein (Rhodanobacter denitrificans MT42)
MPHFHDPVARLDGAIKRYGRLTALDGADLQLRRGELLALLGPNGAGKTTAIALLLGLIRA
DAGTAELFGQEPQRIEARRRIGVMLQNAELPPTLRVGELLRLTASYYPAPRALAESAELA
GVADLLRRPYAKLSGGQQRRVQFALALCGRPELLFLDEPTVGMDVEARQQLWAAIRRLVA
EGCSVLLTTHYLEEAEALADRVCVMSRGRMLHEGTVEALRARVALRRVRCLSTLSVEAVR
DWPEVSEVRRDRERLHIATAAAEAVVRRLLDADPRLRELEVQRAGLAEAFTELTRDATAA
ADTDQREAA