Protein Info for LRK55_RS02705 in Rhodanobacter denitrificans MT42

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 23 to 460 (438 residues), 211.8 bits, see alignment E=9e-67 PF02321: OEP" amino acids 70 to 249 (180 residues), 53.2 bits, see alignment E=1.7e-18 amino acids 275 to 459 (185 residues), 64.9 bits, see alignment E=4.3e-22

Best Hits

KEGG orthology group: None (inferred from 48% identity to xal:XALc_1770)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>LRK55_RS02705 efflux transporter outer membrane subunit (Rhodanobacter denitrificans MT42)
MPRPLSKTTSKHGWLTCLLGAVACGLAGCAAPLPRLAPPVPARWQHAVAADPARPTDLHG
WWHAFADPALDALVDRALAGNLDVAQAVERLRAVRTLHERAHARYLPELHARTHDAIDPD
ASASFLMAGFDASWELGLFGRAEGTRRESQGALDAGVADLHAARVSLVAEVVREWIGLRT
AQQQEQLLQQISRQRRQAWELQQTRQRLQLAAPSAVDQAQAAWAQAEAALAAPRQAIDAS
AQRLAVLLGQNHPDPAWLQAGAPPELGAWRLDGTPAELLRTRPEIARAEADVLRTAGELA
LTHAELFPSVGLGASMVWATDINNNHRISTTPNGITSLGPMIDIPLFDWGMRLAATHAKA
HELRASVLAYRQAVLQGVAEVETALGSLQQQRQREQQDRQAWQALQRADQAVQVRARLRL
DGPLDRLESRVAADQAALELADARAAHGLAYVALFKALGGAPLPAPDTEQAASPAPADAH
GAPR