Protein Info for LRK55_RS01910 in Rhodanobacter denitrificans MT42

Annotation: diguanylate cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1243 transmembrane" amino acids 38 to 56 (19 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 378 to 538 (161 residues), 128.9 bits, see alignment E=8e-42 PF00990: GGDEF" amino acids 379 to 536 (158 residues), 150.2 bits, see alignment E=1.1e-47 PF11563: Protoglobin" amino acids 566 to 675 (110 residues), 26.4 bits, see alignment E=1.6e-09 PF00563: EAL" amino acids 894 to 1130 (237 residues), 143.9 bits, see alignment E=1.4e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1243 amino acids)

>LRK55_RS01910 diguanylate cyclase (Rhodanobacter denitrificans MT42)
MNSQEQARGELRERFYRSVAETLALLHAPPDRDRRRTMVTIAGILASTMDLPLVWVGRRE
PGQDSVEVMAAAGTAAEYASALRLSADESAPGGSGPVGMVLREEQARVTPVGAPEFAPWR
DDARRHGFGSCIVAASRTRDDGQLVLTAYSRDDGPSLSGELLDWAQRLADELSRFWDHQL
LLEHSVRMGRYRDAQRTIQRALLEQPDPESVYRTLARALVDIAGAAAVDVFAADGADPML
RRMALVGPIADIVRGLPLPPRHDDGAVVPAQTQAFMQGAPVIWRHSPDAPQDDTAFRREL
LEHAGAVGCWPLFASPAGAIGAARMPTGVFAVLTVESDAFDDEMCRLLDEIADATGLALR
QHAQRHALLQEQERQTYLALHDDLTGLPNRRALDRHLENVLARARRRGRLVAVGLLDLDD
LKPINDRHGHAVGDRLLVEMASRFRQMLRAGDYVARLGGDEFVLVFEDLESVQDIDGLLE
RIGEVLGFPVTIDGTAMAVGASLGIALYSSETRTTGEQLLRRADQAMYQVKSRKRHRSHW
WSLVSPDGVVDQADELDAAATPYGEHAAMLLDSCSKAWEPRLPGIVESFHAGLRAHDGIS
RLLDLLPAEDLKTFEAHQLQHLLVLLRADLDMAGHRARATRTGLFHAACGLEEVWLLEAI
EQLRDIMATVLVGVGQNERRALAVLLQRLGMERQWQLESMRELQRRRVALLARVNALAWS
AEGYLELIQGVADILVSHKEIVACSAGRPDASGQLTYEAVAGTAFAEYLHALVSGKAAPI
RVDTDQPSGLGSSGRAWRTARIQRCAHYGSDPAMAPWRDIALSLGVVSNVAIPLCASPLQ
PAVVLTVYSPYAGGFHSEDQRAFLEQIKTVLDLALARLAPPRQGTELLPFFMRERWRAMV
ATDALQMHYQPLVRLADGRVAEIEALARLRDEDGELLAPARFLPALGADDLLVLFRQGLG
QAAACRGSLLRAGYALDISVNAPAAALGDPRYAEVAAAVIASSGCAAQALLFEILESPIG
TEHAAVPQGSGMQSLKALGVRLVEDDLGAGYSSLIRLRQWPFDRIKIDQAIVGQARQDPL
GTLRFIRQLIRIGHDLRLEVVVEGLESPELIEAATILGADFGQGYALARPMPADALSAWL
TDYRWEQASAWPQTGLGALAGELRWEEQFVALPPEPAFWARHAQISCDPGEYLHRPELGS
VLDASHQAMHKAALAGPADPGYRREREAFLALLVEHVLDNFRS