Protein Info for LRK55_RS01880 in Rhodanobacter denitrificans MT42
Annotation: acyl-CoA dehydrogenase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 51% identical to ACADS_BOVIN: Short-chain specific acyl-CoA dehydrogenase, mitochondrial (ACADS) from Bos taurus
KEGG orthology group: K00257, [EC: 1.3.99.-] (inferred from 76% identity to smt:Smal_2609)MetaCyc: 52% identical to short-chain acyl-CoA dehydrogenase monomer (Homo sapiens)
BUTYRYL-COA-DEHYDROGENASE-RXN [EC: 1.3.8.1]; 1.3.8.1 [EC: 1.3.8.1]
Predicted SEED Role
"Butyryl-CoA dehydrogenase (EC 1.3.99.2)" in subsystem Acetyl-CoA fermentation to Butyrate or Anaerobic respiratory reductases or Butanol Biosynthesis or Isobutyryl-CoA to Propionyl-CoA Module or Isoleucine degradation or Valine degradation (EC 1.3.99.2)
MetaCyc Pathways
- oleate β-oxidation (32/35 steps found)
- pyruvate fermentation to butanol II (engineered) (4/6 steps found)
- pyruvate fermentation to hexanol (engineered) (7/11 steps found)
- 1-butanol autotrophic biosynthesis (engineered) (18/27 steps found)
- valproate β-oxidation (5/9 steps found)
- superpathway of coenzyme A biosynthesis II (plants) (5/10 steps found)
- β-alanine biosynthesis II (1/6 steps found)
KEGG Metabolic Maps
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Brassinosteroid biosynthesis
- Butanoate metabolism
- Caprolactam degradation
- Fatty acid metabolism
- Geraniol degradation
- Valine, leucine and isoleucine degradation
Isozymes
Compare fitness of predicted isozymes for: 1.3.99.-, 1.3.99.2
Use Curated BLAST to search for 1.3.8.1 or 1.3.99.- or 1.3.99.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (386 amino acids)
>LRK55_RS01880 acyl-CoA dehydrogenase family protein (Rhodanobacter denitrificans MT42) MDFRFTEDQLSIQSIARDFAQKRIVPVAAELDAKGEFPLENIREMGKLGLMGIEVPEAYG GAGMDSIAYVLAMIEIAAADAATATVMSVNNSLFCNGILKHGNEEQKQKYVRAIATGEAI GAYALTEPQSGSDASAMHTRATKNANGDWVINGKKSWITSGPVARYIVLFAISTPGIGAK GVSAFIVDTQLPGFHAGKTEPKLGIRASATCEIEFTDYVLPKENLLGDEGKGFSIAMGVL DAGRIGIASQAVGIARAAYEATLQWSRDRKAFGQPIGTFQMTQSKIADMKCKLDAATLLT LRAAWAKGETEKHGGRFGTEAAVAKLTASEAAMWISHQAVQIHGGMGYSKEMPLERYFRD AKITEIYEGTSEIQRMVIARAETGLR