Protein Info for LRK55_RS01620 in Rhodanobacter denitrificans MT42

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 335 to 358 (24 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 328 (303 residues), 76.3 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 53% identity to yep:YE105_C2720)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>LRK55_RS01620 MFS transporter (Rhodanobacter denitrificans MT42)
MQTSSIPLTADVRNGLASAIRATRLVFLVSGIGMAAWAPMVPYAKARLGLDEAGLGMLLL
AFGGGSMLSMPLVGWLTHRFGSRRVIGVGGLLLCLALPLLALAPGVATLALALLYFGAAL
GAVDVAMNAHAVEVERRDGRPLMSGFHGLFSIGGLSGAAGMSLLLALGMPLTAAAVAMAA
LLAVVLVTQWPRLIEHVDAAGERAAFGMPRGIVLALGLLCFISFLAEGSMLDWSAVFLRD
FRGFSVASAGIGYAAFSVAMAIGRLGGDRIVARFGPVLTVRLGACTAAAGFLLASMLAWP
PAAPIGFVLVGLGAANIVPVMFGAAGRLPGTSPGIAIATVTALGYAGLLSGPALIGFLAQ
ASSLPVALAAVAGLLLLTAASARLVRS