Protein Info for LRK55_RS00475 in Rhodanobacter denitrificans MT42

Annotation: dicarboxylate/amino acid:cation symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 176 to 193 (18 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 242 to 267 (26 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 358 to 376 (19 residues), see Phobius details amino acids 382 to 403 (22 residues), see Phobius details PF00375: SDF" amino acids 7 to 428 (422 residues), 349.4 bits, see alignment E=1.4e-108

Best Hits

KEGG orthology group: None (inferred from 65% identity to ote:Oter_0383)

Predicted SEED Role

"Proton/glutamate symport protein @ Sodium/glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>LRK55_RS00475 dicarboxylate/amino acid:cation symporter (Rhodanobacter denitrificans MT42)
MSTSTPLAKRILWGLVIGVLAAVVTLGIGQLHPPTLALMQKVSGAVFDPFGQIFLRMLFF
VVIPLVFTSLASGVAQLGRLDRLGPLAGRTFLLFFLNMGIAVAIGLAMMNTVQPGHHLDE
QARIQLMQEYGGSAQQSIDRKAAQPGMSFGTLVEMFMPRNLLGAVAGPSRDALGDVLPLI
VFAILVGAAATQLREKERKRVQVALDTITDLMTKIVGFALELAPYAVPAMIYSVIVKVGV
DVLLALSVFVVGCAVALALHLFGTMSLWLRFLAGRSPPEYFRQIRPLLITAFSTSSSNAC
LPASLAVAHDELKLAPSTAGFVLPLGATMNMSGTALFEGCVVLFVAQAFGVELTLSHQAI
LMLLSVLSAVAVAGIPGGSLPMIAGLLATFGIPPEGIGIIIGVDRILDMMRTTVNVGSDI
VTATVVDHQLRERLAAAP