Protein Info for LRK55_RS00130 in Rhodanobacter denitrificans MT42
Annotation: 3-phosphoshikimate 1-carboxyvinyltransferase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 70% identical to AROA_XANC5: 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) from Xanthomonas campestris pv. vesicatoria (strain 85-10)
KEGG orthology group: K00800, 3-phosphoshikimate 1-carboxyvinyltransferase [EC: 2.5.1.19] (inferred from 73% identity to psu:Psesu_1718)Predicted SEED Role
"5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)" in subsystem Chorismate Synthesis or Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) (EC 2.5.1.19)
MetaCyc Pathways
- superpathway of aromatic amino acid biosynthesis (18/18 steps found)
- superpathway of L-tryptophan biosynthesis (13/13 steps found)
- superpathway of L-phenylalanine biosynthesis (10/10 steps found)
- superpathway of L-tyrosine biosynthesis (10/10 steps found)
- chorismate biosynthesis I (7/7 steps found)
- chorismate biosynthesis from 3-dehydroquinate (5/5 steps found)
- chorismate biosynthesis II (archaea) (8/12 steps found)
- superpathway of chorismate metabolism (40/59 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Phenylalanine, tyrosine and tryptophan biosynthesis
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.5.1.19
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (436 amino acids)
>LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase (Rhodanobacter denitrificans MT42) MSGRLDWSSRASGPLLGSVRVPGDKSVSHRALMLAAIAEGESRIRGFLEGEDTRATAAVL AQLGVRIDTPSPGERVVHGTGLHGLRGTAQALDCGNAGTGMRLLAGLLAGQAFDSTLVGD ASLSKRPMRRVTDPLALMGAHIDTRDGLPPLRVRGGQPLHGIRYELPVASAQVKSALLLA GLYAAGDTEVIEPHPTRDYTERMLAAFGWPIVFAPGWAKLSGGHALRATDVEVPADFSSA AFFLVAASIVPGSELRLQAVGLNPRRTGLLEALRLMGADITIENEREAGGEPVGDLVVRH APLHGVELPEALVPDMIDEFPALFIAAAVASGRTLIRGAAELRVKESDRIATMAAGLRTL GTAIEETPDGAIIHGGSLGGGTVASHLDHRIAMSFAVAGLVATAPVRIDDCSHVATSFPG FLELTSGCGFALQAIT