Protein Info for LRK54_RS18050 in Rhodanobacter denitrificans FW104-10B01

Annotation: lipopolysaccharide assembly protein LapB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13176: TPR_7" amino acids 73 to 96 (24 residues), 21.7 bits, see alignment (E = 7.6e-08) PF13432: TPR_16" amino acids 113 to 169 (57 residues), 19 bits, see alignment E=8.2e-07 amino acids 188 to 246 (59 residues), 26.3 bits, see alignment E=4.5e-09 PF13181: TPR_8" amino acids 217 to 246 (30 residues), 13.7 bits, see alignment (E = 3.1e-05) PF18073: Rubredoxin_2" amino acids 356 to 383 (28 residues), 41.3 bits, see alignment (E = 4.9e-14)

Best Hits

KEGG orthology group: None (inferred from 54% identity to psu:Psesu_1387)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>LRK54_RS18050 lipopolysaccharide assembly protein LapB (Rhodanobacter denitrificans FW104-10B01)
MNFLYVLVPLVPAAFVLGWWASRQAGARRSGAEVSELSSDYFRGLNYLLNEEQDKAIEVF
LKLAEYNRDTVETHLALGNLFRRRGEVDRAIRLHQHLVSRPGLTDAMKTVALLELGEDYM
RAGLLDRAEALFSDLVAMDAHAPSALRHLIAIYQHERDWHKAIEHARRLEVMTGEDEAPM
IAQFYCELADRSRQHGARAEARDYLRQAFECQPGCVRAFMLTGRLLSEDGQHAEAVTAYE
AAIKADIAFTPDILPPLLNSYARSQQMERAEHFLHDMLGRYHGVSPVLALTHLYRQRDGE
RAAVDFLTAQLRQRPSVRGLMALIDATMDKIEGEARENFLILRDLTRKLLEGQAMYRCSR
CGFGAKAHHWQCPSCKSWSTIRPIHGVASE