Protein Info for LRK54_RS17405 in Rhodanobacter denitrificans FW104-10B01

Annotation: divalent metal cation transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 49 to 71 (23 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 295 to 321 (27 residues), see Phobius details amino acids 341 to 360 (20 residues), see Phobius details amino acids 366 to 387 (22 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details PF01566: Nramp" amino acids 36 to 400 (365 residues), 276.2 bits, see alignment E=2e-86

Best Hits

KEGG orthology group: None (inferred from 59% identity to msv:Mesil_1308)

Predicted SEED Role

"Manganese transport protein MntH" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>LRK54_RS17405 divalent metal cation transporter (Rhodanobacter denitrificans FW104-10B01)
MAVRENTEDGGPETPPWKDLGAGLITGAADDDPSGIATYSQVGAAFGYGMLWAALVTMPL
MIAMQAISAGIGRVTGHGLMDGMRRYYPRTLVYALLMLVFIANVINLAADIGAMGAALKL
LIGGPALLYAALFAGLSLLLQVFIPFTRYAPILKLLTLSLFAYVATALVIDVPWRAVLRS
IVLPPIRWDAAYAMGLVALLGTTISPYLFCWQASEEVEEIETSKRRKPLQDAPQQAPSAL
RRIGIDTTVGMIFSNLIAFFIILTAAVVLHAHGKTDIQSSAQAAEALRPLAGDLAFALFA
AGIIGTGLLAVPVLAGATAYAAAGAFGRRSGLEHKPHEARFFYGVLIGSALLGIALNLTP
LDPIKALYWSAVINGVAAVPLMVAMMLMGSQRKVMGDFTIPWPLKLFGWLATAAMGAAVV
GMFVTWGK