Protein Info for LRK54_RS17165 in Rhodanobacter denitrificans FW104-10B01

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1140 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 723 to 748 (26 residues), see Phobius details amino acids 1015 to 1039 (25 residues), see Phobius details amino acids 1059 to 1081 (23 residues), see Phobius details amino acids 1099 to 1109 (11 residues), see Phobius details PF00704: Glyco_hydro_18" amino acids 118 to 404 (287 residues), 47 bits, see alignment E=1.1e-15 PF01522: Polysacc_deac_1" amino acids 489 to 599 (111 residues), 110.6 bits, see alignment E=1.7e-35 PF13641: Glyco_tranf_2_3" amino acids 765 to 988 (224 residues), 129.8 bits, see alignment E=5.1e-41 PF00535: Glycos_transf_2" amino acids 769 to 934 (166 residues), 114.6 bits, see alignment E=1.7e-36 PF13506: Glyco_transf_21" amino acids 833 to 986 (154 residues), 67.4 bits, see alignment E=4.2e-22 PF13632: Glyco_trans_2_3" amino acids 849 to 1036 (188 residues), 76.4 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: None (inferred from 59% identity to rva:Rvan_2148)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1140 amino acids)

>LRK54_RS17165 glycosyltransferase (Rhodanobacter denitrificans FW104-10B01)
MQKKPIFFDPTGRRASHVSRLALAAAVISTLFVVACAASLFVWPSMSGLHIGEHNRTRHA
LANVKAAAPELLKPAARLAAEVRARQKLLHPPRTHAGKTSAHVPPPSLDKPAGRPLAIGF
YVNWDESSYPSLKRALPTLDWVIPSWMHVSGPDMALHTDIDAKALKLIRAQKPSTPILPL
LQNMVNMAWDGPGLARMLADPAVRQARIAQIVAFLDANHFQGVTIDFEDVPAASQKDLKA
FLSELNDAFDPHGWGIVLSVPFDDADWDYAGYADIVDFELLMAYDQHWAGKDPGSVAAQD
WFEDTLDQRMKVLDPNQVIVAIGSYGYDWSHGQNAEALTFQDAMDRASDAQAVITFDPDT
QNPTFSYGEDDGSTHQVWFLDGVTAFNQIHAADDYRPYGYSLWRLGSEDPSVWSVLGRPY
GAAAPDALRTIGQGEDIDIQGQGEVLEIAAQPSPGARSIEVDKNDGSIDDENYSALPSSY
VIRRAGTLPHKIALTFDDGPDAQWTPQILDILKAKHVPATFFIIGASAEMSPKLVQREVA
EGHDVGNHTFTHPNLGDTPPGIVSLELNATQRLFEALTGRSMRLFRAPYFGDAEPTTADE
LVPIGIAQKMGYISVGLHVDSEDWQRPGVDKIVDNVLGQVAASNSERTGQVVLLHDAGGE
RSQTIAALPRIIDGLRARGYDFVTVSELAGLTREQSMPPLPPGSLSRWADRSVFLALGWF
GHLINWLLTTTIALGVARLLLLGVLALVNRWQERRRAPPTLPDDPPLVSVLIPAYNEAKV
IASSIRRILKSRYANLEVIVVDDGSTDGTSTVVREHYAAEPRVRLISIPNGGKAHAVNTA
LRESNGTVVVALDADTQFEPHTISRLVRWFADPKVGAVAGNAKVGNRINLITLWQALEYI
TAQNLERRALAALGAITVVPGAVGAWRREALERLGGFPADTLAEDQDLTIAVQKAGYHTL
FDAEAIAWTEAPDTARGLARQRFRWAYGTLQCLWKHRDTTFNPRYGALGMVALPQVWLFQ
ILFSVVSPLVDLVLVWQIVSTGMDYLQHRAQFDDTNLLRMLAFYAAFMAVDLGASALAFA
MEKKEKWSLLWWLVLQRFGYRQLMYYVVVRSVWTAIKGPSVGWGKQERKATVNTQDGSGH