Protein Info for LRK54_RS16015 in Rhodanobacter denitrificans FW104-10B01

Annotation: formylglycine-generating enzyme family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF03781: FGE-sulfatase" amino acids 370 to 642 (273 residues), 214.2 bits, see alignment E=1.3e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>LRK54_RS16015 formylglycine-generating enzyme family protein (Rhodanobacter denitrificans FW104-10B01)
MPNNAILRRQRALGGGLGVLVLGFALLYHFFPRVFHVDPAQAPRRSMSMGTVAPASGLQP
ERLSAIGELNAGPPLTLAPAAVIAARGSHNANLPEQLSADPPEVRALLEQATRALHAGRL
VGAADSAAALFQQALKTKPDSRRAVQGLFDVHARLVAEIDQDIAVGDADAAQDLLGALRT
LPNAETEVTQLEASLKVLEQVRPMLAKAAGLLQQGKADRPAGGSALELYREVQKLDPQNA
VAEQGIFQVQRAVLDRALAAVAQNDFAGADRELAAAQAIRPGSQQMIDVHKRVDDMREQR
ANGMLAQAHSALDAGNVELATRLAAQVRAIAPGLAALAAFDEQLTNARLYASFKPGQVFT
DRYVDLPGKTPAMVVIPTGSFRMGASADDDRSATAQPQHTVTIGKGFAMARSAVTVAQFR
EFVRASNYVPDSIRLGGASVYDERSGALREDSAASWQDDYAGRKADDDLPVVNVSWNDAK
AYADWLSQRTGKTYRLPSEAEFEYALRGGTRSRYWWGDDAPKHTVENLTGSGDRSRSGRR
WSHAFRNYRDGYWGPAPVMSFAANPFGLYDINGNVSEWALDCWHDNYIRAPDDGSAWINP
GCRSHVLRGGSWGSSPEQVDSTYRQGADGDLRSGRVGFRVVREL