Protein Info for LRK54_RS15570 in Rhodanobacter denitrificans FW104-10B01

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 45 to 69 (25 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 258 to 281 (24 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 319 to 320 (2 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 353 to 373 (21 residues), see Phobius details amino acids 382 to 402 (21 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 367 (338 residues), 133.4 bits, see alignment E=1.5e-42 amino acids 254 to 407 (154 residues), 54.3 bits, see alignment E=1.6e-18 PF00083: Sugar_tr" amino acids 58 to 201 (144 residues), 28.3 bits, see alignment E=1.3e-10 amino acids 237 to 381 (145 residues), 27.1 bits, see alignment E=2.9e-10

Best Hits

KEGG orthology group: None (inferred from 68% identity to bja:bll2640)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>LRK54_RS15570 MFS transporter (Rhodanobacter denitrificans FW104-10B01)
MNQPTEASGSATAKTPSVLRRIPAGIWALGLVSMLMDTSSEMIHALLPVYLVDVLGASAL
AVGFIEGIAEATAAITKVFSGALSDWLGRRKLLVAIGYGLAAFTKPVFPLAGTLDWVVAA
RFVDRIGKGIRGAPRDALIADLAPAELRGASFGLRQSLDTTGAFLGPALAIMLMWLTADN
IPLVFWFAVLPGFAAFALVVFGVRDARGDKEGKPARAPWSRAELARLPPLYWGVVAIAAV
FTLARFSEAFLVLRAQELGLGLVLIPLVLVVMNVVYALSSYPVGVLADRFDRGALLGLGV
LVLVASDLALAFVGGLAGLALGVTLWGLHMGMTQGLLAALVADAAPANLRGTAYGVFNLV
SGLALLAASVVAGELWDAFGSHATFLAGACFAVVALLALVPVAQRVRRNRPAPG