Protein Info for LRK54_RS15410 in Rhodanobacter denitrificans FW104-10B01

Annotation: FGGY-family carbohydrate kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 PF00370: FGGY_N" amino acids 6 to 254 (249 residues), 147.1 bits, see alignment E=7.3e-47 PF02782: FGGY_C" amino acids 264 to 458 (195 residues), 96.6 bits, see alignment E=1.7e-31

Best Hits

KEGG orthology group: None (inferred from 82% identity to pmy:Pmen_1560)

Predicted SEED Role

"Glycerol kinase (EC 2.7.1.30)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or MLST (EC 2.7.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.30

Use Curated BLAST to search for 2.7.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>LRK54_RS15410 FGGY-family carbohydrate kinase (Rhodanobacter denitrificans FW104-10B01)
MSEQGYLLAIDNGTQSVRALLFDLDGHLISKGKVELQAYYSTQPGWAEQDPEYYWASVGE
ACRRLWAQLDIDRSLIRGVSLTTQRGTVINVDEHGRPLRPAILWLDQRRAEVRGRIKGPW
GWLFKLAGAQATVDYFRAQAEVNWVAQQQPEIWAKTHKVLLLSGFLSQRLCGQYVDSVAC
CVAYLPFDYKRLRWAAPRDWKWQAMPVRRAQLPKLYKPGEQLGRISAEASRHTGIPEGLP
LIAAGADKACEVLGAGGVEPDTACLSYATTATINTTRRSYLETVPMIPPYPAAVPDHFNT
EVMIYRGFWMVSWFKQEFGLREMQRAQALGVEPEALFDELVNAVPPGSMGLMLQPYWSPG
IRDPGLEAKGAIIGFGDVHTRAHVYRAILEGLAYALRQGKEKIERRSGTRITRLRVSGGG
SQSEAAMQLTADVFGLPAERPQVYETSGLGAAICCAVGLGLHPDFPTAIRAMTRVGQVFQ
PDPQAQRIYQQLYAEVYLRMYRQLRPLYRKIRQITGYPA