Protein Info for LRK54_RS15240 in Rhodanobacter denitrificans FW104-10B01

Annotation: FTR1 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 35 to 62 (28 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 177 to 200 (24 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details PF03239: FTR1" amino acids 3 to 255 (253 residues), 102.5 bits, see alignment E=1.4e-33

Best Hits

KEGG orthology group: K07243, high-affinity iron transporter (inferred from 54% identity to bac:BamMC406_2897)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>LRK54_RS15240 FTR1 family protein (Rhodanobacter denitrificans FW104-10B01)
MGAVALLVFREVLEAALIVSVVAAATRGVPRRGWFIGGGIALGGFGAVLVALSADLLAAA
FSGVGQELFNAGVLLAAVLMIGWHVLWMSSHGRELSRQMQLLGNAVHSGASSLGLLLAVV
ALAVLREGSEVVLFLYGMRAGGAEHLWAGLAIGVVAGAALGFALYAGLLRIPLRHFFGVT
NAMLVLLAAGLASTAARYLIQADLLPAWGNQLWDSSWLLGNGSVPGQTAHILVGYDAQPA
GMQLVFYALTLLALWMGARFVKRQPPTRPLDGRPAVHPAC