Protein Info for LRK54_RS15210 in Rhodanobacter denitrificans FW104-10B01

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 979 TIGR00630: excinuclease ABC subunit A" amino acids 4 to 926 (923 residues), 1450.8 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 130 to 237 (108 residues), 119.7 bits, see alignment E=1.3e-38 PF17755: UvrA_DNA-bind" amino acids 291 to 400 (110 residues), 121.8 bits, see alignment E=4.1e-39

Best Hits

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 70% identity to abo:ABO_0427)

MetaCyc: 71% identical to UvrABC excision nuclease subunit A (Escherichia coli K-12 substr. MG1655)
3.1.25.-

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (979 amino acids)

>LRK54_RS15210 excinuclease ABC subunit UvrA (Rhodanobacter denitrificans FW104-10B01)
MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC
PDHGIPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRARVD
GTVFDLDAVPPLTLRQKHTIEVVIDRFRPREDIKQRLAESFETALRLGDGLVILANMDAG
ANAKEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPSCDGLGVTQVFDAARVVGHPE
LPLSNGAVRGWDRRNAHYFQLILSLATHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFR
YITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPECAGQRLNRSAR
NVFVADHALPSLTARSIDDALAFFEELKLAGWRGEIAVKIVKEIRERLSFLNDVGLNYLT
LDRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGN
TVIVVEHDEDAIRMADHVLDIGPGAGVHGGEIVAQGSVQDMLDSPRSVTGQFLSGERAIE
VPKQRRLPNDDAYWLCLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLA
AAELNGASAQPAPFQSVTGLELFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRDMFSQVP
EARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDACHGKRYNRETLEIL
YKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRVK
LSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTAD
WVVDLGPEGGAGGGRILVAGTPETVAATPESHTGHFLAPHLKPAKPKKPGAATRVKAATR
HIASADKYKPMRGSKKKRS