Protein Info for LRK54_RS14890 in Rhodanobacter denitrificans FW104-10B01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 561 transmembrane" amino acids 287 to 307 (21 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 445 to 468 (24 residues), see Phobius details amino acids 475 to 494 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (561 amino acids)

>LRK54_RS14890 hypothetical protein (Rhodanobacter denitrificans FW104-10B01)
MTPLVIGVTSHRNIPADEIEPIRQRVRDFLAQLRHDFPGLPLVVVSALAEGGDQLVAQEA
LAAGARLVAPLPLPPDLYVEDFSSAAVRADFHRLCSQAEIVPLPPPKGQSLLDLGTPGLA
RDRQYAKAGVYIASHCHILLAIWDGKVSGRLGGTAQIVNYHLNGTMPGLIDRRQDTRHVL
GGGDESLLYHIVCSRDGADGAPAAGLLPLQRVWRTADTVSAADSLPADFRLMFARMVEFN
GECDTYAGEIAASVRQADAAGDAADIDSLFHAADWLALHFQRRVLLAMRLTYTLAALMGI
AFTFYAHLPAQDFLIYLFLLLFASGGAVAMLARRRGWHRKYLDYRALAEGLRIQSYWQRA
NISANADHEFAHDNFLQRQNIELGWIRNVMRAAGLHAATRPAQPSPAALTQVIAEWVGES
GKSGQLHYYERKTAERTGLHHVTEVVGSLSLWGGVAISVFLAVFVHRLSHDTKTVLVLIM
AVLSIIAAVREAYAYRKADKELIRQYRFMQRIFASARAALDRTHDPVLQRQILLSLGDAA
LTEHAEWTLMQRERQVEHSKL